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Crystal structure of the bacterial ribosomal decoding a site in the presence of [CO(NH3)6]CL3

Analyse Crystal structure of the bacterial ribosomal decoding a site in the presence of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BNL
Type: RNA
Length: 44 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: A site of bacterial ribosome
Ligands: NCO
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	A site of bacterial ribosome	rna	22	—	—

Ligands and binding sites

NCO · Cobalt hexammine(iii) · ligand · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	731	0.64	0.75	43	NCO

Interfaces

1 interface between chains.

A–B · 1019 Å² buried · 106 hydrogen bonds · nucleic-nucleic

Compared structures

3BNL · Crystal structure of the bacterial ribosomal decoding A site in the presence of… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3BNL · PDBe 3BNL

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