Research workbench
Crystal structure of cyclopropane-fatty-acyl-phospholipid synthase- like protein (YP_807781.1) from lactobacillus casei atcc 334 at 1.85 a resolution
Analyse Crystal structure of cyclopropane-fatty-acyl-phospholipid synthase- like… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BKX
- Type
- protein
- Length
- 548 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SAM-dependent methyltransferase
- UniProt
- Q034N3
- Ligands
- CL
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | SAM-dependent methyltransferase | protein | 274 | 45% helix, 14% strand | Q034N3 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 849 | 0.74 | 0.78 | 58 | empty |
| 2 | 668 | 0.71 | 0.78 | 54 | empty |
| 3 | 137 | 0.48 | 0.78 | 24 | empty |
| 4 | 75 | 0.32 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1461 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3BKX · Crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-like protein… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q034N3
- Elsewhere: RCSB PDB 3BKX · PDBe 3BKX · UniProt Q034N3
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