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Crystal structure of putative outer membrane lipoprotein-sorting protein domain from vibrio parahaemolyticus

Analyse Crystal structure of putative outer membrane lipoprotein-sorting protein domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BK5
Type: protein
Length: 235 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative outer membrane lipoprotein-sorting protein
UniProt: Q87Q63
Ligands: MG
Pockets: 2 · best druggability 0.87

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative outer membrane lipoprotein-sorting protein	protein	235	13% helix, 51% strand	Q87Q63

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	762	0.87	0.90	68	empty
2	54	0.30	0.76	15	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3BK5 · Crystal structure of putative outer membrane lipoprotein-sorting protein domain from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87Q63
Elsewhere: RCSB PDB 3BK5 · PDBe 3BK5 · UniProt Q87Q63

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