Research workbench
Crystal structure of the surrogate light chain variable domain vprebj
Analyse Crystal structure of the surrogate light chain variable domain vprebj in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BJ9
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoglobulin iota chain, immunoglobulin lambda-like polypeptide 1
- UniProt
- P12018
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | Immunoglobulin iota chain, immunoglobulin lambda-like polypeptide 1 | protein | 116 | 8% helix, 51% strand | P12018 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains 1
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3BJ9 · Crystal structure of the Surrogate Light Chain Variable Domain VpreBJ · the same entry in another collection · chain 1 against 1, TM-score 1.00
- P12018 · AlphaFold monomer V2.0 prediction for immunoglobulin iota chain (P12018) · a predicted model of the same protein · chain 1 against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12018
- Elsewhere: RCSB PDB 3BJ9 · PDBe 3BJ9 · UniProt P12018
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