Research workbench
Crystal structure of a dimeric ferredoxin-like protein of unknown function (TFU_0763) from thermobifida fusca yx at 1.50 a resolution
Analyse Crystal structure of a dimeric ferredoxin-like protein of unknown function… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BGU
- Type
- protein
- Length
- 210 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin-like protein of unknown function
- UniProt
- Q47RW6
- Ligands
- NBZ, CL
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferredoxin-like protein of unknown function | protein | 106 | 34% helix, 34% strand | Q47RW6 |
| B | Ferredoxin-like protein of unknown function | protein | 104 | 38% helix, 33% strand | Q47RW6 |
Ligands and binding sites
- NBZ · Nitrobenzene · ligand · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 13 copies · chains A, B
- ACT · Acetate ion · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.60 | 0.87 | 23 | EDO, NBZ |
| 2 | 111 | 0.49 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 418 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3BGU · Crystal structure of a dimeric ferredoxin-like protein of unknown function (tfu_0763)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47RW6
- Elsewhere: RCSB PDB 3BGU · PDBe 3BGU · UniProt Q47RW6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.