Research workbench
Crystal structure of novel immune-type receptor 11 extracellular fragment from ictalurus punctatus including stalk region
Analyse Crystal structure of novel immune-type receptor 11 extracellular fragment from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BDB
- Type
- protein
- Length
- 756 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Novel immune-type receptor 11
- UniProt
- Q8UWK4
- Pockets
- 10 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Novel immune-type receptor 11 | protein | 126 | 2% helix, 40% strand | Q8UWK4 |
Pockets
10 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.39 | 0.77 | 21 | empty |
| 2 | 85 | 0.38 | 0.77 | 17 | empty |
| 3 | 91 | 0.37 | 0.76 | 20 | empty |
| 4 | 110 | 0.37 | 0.74 | 17 | empty |
| 5 | 119 | 0.36 | 0.73 | 22 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1345 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 1302 Ų buried · 10 hydrogen bonds · protein-protein
- E–F · 1206 Ų buried · 11 hydrogen bonds · protein-protein
- C–F · 308 Ų buried · 6 hydrogen bonds · protein-protein
- B–F · 201 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 3BDB · Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment from Ictalurus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UWK4
- Elsewhere: RCSB PDB 3BDB · PDBe 3BDB · UniProt Q8UWK4
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