Research workbench
Crystal structure of mouse selenocysteine synthase, sodium phosphate soak
Analyse Crystal structure of mouse selenocysteine synthase, sodium phosphate soak in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BCB
- Type
- protein
- Length
- 445 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- O-phosphoseryl-TRNA(SEC) selenium transferase
- EC
- 2.9.1.-
- UniProt
- Q6P6M7
- Ligands
- PO4, CL
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | O-phosphoseryl-TRNA(SEC) selenium transferase (EC 2.9.1.-) | protein | 445 | 47% helix, 16% strand | Q6P6M7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 253 | 0.54 | 0.76 | 29 | empty |
| 2 | 113 | 0.43 | 0.77 | 23 | empty |
Modifications
Observed in the structure: 1 modified (cofactor).
Compared structures
- 3BCB · Crystal structure of mouse selenocysteine synthase, sodium phosphate soak · the same entry in another collection · chain A against A, TM-score 1.00
- Q6P6M7 · AlphaFold monomer V2.0 prediction for O-phosphoseryl-TRNA(SEC) selenium transferase… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P6M7
- Elsewhere: RCSB PDB 3BCB · PDBe 3BCB · UniProt Q6P6M7
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