Research workbench
The TRNA(PHE) fitted into the low resolution cryo-EM MAP of the 50S.NC-TRNA.HSP15 complex
Analyse The TRNA(PHE) fitted into the low resolution cryo-EM MAP of the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BBV
- Type
- RNA
- Length
- 76 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA(PHE)
- Pockets
- 4 · best druggability 0.64
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| z | TRNA(PHE) | rna | 76 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 723 | 0.64 | 0.75 | 34 | empty |
| 2 | 266 | 0.48 | 0.74 | 20 | empty |
| 3 | 53 | 0.36 | 0.81 | 10 | empty |
| 4 | 55 | 0.24 | 0.73 | 13 | empty |
Modifications
Observed in the structure: 9 modified (nucleotide modification).
Compared structures
- 3BBV · The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex · the same entry in another collection · chain z against z, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3BBV · PDBe 3BBV
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