Research workbench
Structure of active wild-type prevotella intermedia interpain a cysteine protease
Analyse Structure of active wild-type prevotella intermedia interpain a cysteine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BBA
- Type
- protein
- Length
- 496 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interpain a
- UniProt
- A9J7N5
- Pockets
- 5 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interpain a | protein | 246 | 26% helix, 21% strand | A9J7N5 |
| B | Interpain a | protein | 250 | 27% helix, 22% strand | A9J7N5 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.47 | 0.75 | 30 | empty |
| 2 | 155 | 0.47 | 0.77 | 30 | empty |
| 3 | 100 | 0.40 | 0.77 | 18 | empty |
| 4 | 71 | 0.32 | 0.75 | 17 | empty |
| 5 | 65 | 0.28 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 667 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3BBA · Structure of active wild-type Prevotella intermedia interpain A cysteine protease · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9J7N5
- Elsewhere: RCSB PDB 3BBA · PDBe 3BBA · UniProt A9J7N5
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