Research workbench
Crystal structure of the P64488 protein from E.COLI (strain K12). northeast structural genomics consortium target ER596
Analyse Crystal structure of the P64488 protein from E.COLI (strain K12). northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BB6
- Type
- protein
- Length
- 436 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein year
- UniProt
- P64488
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 4 distinct chains · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein year | protein | 109 | 7% helix, 47% strand | P64488 |
| B | Uncharacterized protein year | protein | 111 | 7% helix, 43% strand | P64488 |
| C | Uncharacterized protein year | protein | 113 | 4% helix, 41% strand | P64488 |
| D | Uncharacterized protein year | protein | 103 | 3% helix, 45% strand | P64488 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1183 | 0.80 | 0.81 | 127 | ZN |
Interfaces
4 interfaces between chains.
- A–C · 1133 Ų buried · 15 hydrogen bonds · protein-protein
- B–D · 1129 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 963 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 727 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3BB6 · Crystal structure of the P64488 protein from E.coli (strain K12). Northeast Structural… · the same entry in another collection · chain D against D, TM-score 1.00
- P64488 · AlphaFold monomer V2.0 prediction for uncharacterized protein year (P64488) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P64488
- Elsewhere: RCSB PDB 3BB6 · PDBe 3BB6 · UniProt P64488
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