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Crystal structure of the nitrosomonas europaea rh protein complexed with carbon dioxide

Analyse Crystal structure of the nitrosomonas europaea rh protein complexed with carbon… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3B9Z
Type: protein
Length: 388 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ammonium transporter family rh-like protein
UniProt: Q82X47
Ligands: UNL, CO2
Pockets: 3 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ammonium transporter family rh-like protein	protein	388	74% helix, 0% strand	Q82X47

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
CO2 · Carbon dioxide · ion · chains A
BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.45	0.78	23	UNL
2	54	0.43	0.83	12	empty
3	96	0.37	0.75	18	empty

Compared structures

3B9Z · Crystal structure of the Nitrosomonas europaea Rh protein complexed with carbon dioxide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q82X47
Elsewhere: RCSB PDB 3B9Z · PDBe 3B9Z · UniProt Q82X47

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