Research workbench
Crystal structure of the nitrosomonas europaea rh protein
Analyse Crystal structure of the nitrosomonas europaea rh protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3B9Y
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ammonium transporter family rh-like protein
- UniProt
- Q82X47
- Ligands
- UNL
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ammonium transporter family rh-like protein | protein | 388 | 74% helix, 0% strand | Q82X47 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.46 | 0.78 | 30 | UNL |
| 2 | 114 | 0.39 | 0.75 | 26 | empty |
Compared structures
- 3B9Y · Crystal structure of the Nitrosomonas europaea Rh protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q82X47
- Elsewhere: RCSB PDB 3B9Y · PDBe 3B9Y · UniProt Q82X47
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