Research workbench
Human serum albumin complexed with myristate and azt
Analyse Human serum albumin complexed with myristate and azt in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3B9L
- Type
- protein
- Length
- 582 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P02768
- Ligands
- MYR, AZZ
- Pockets
- 7 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 582 | 69% helix, 0% strand | P02768 |
Ligands and binding sites
- MYR · Myristic acid · ligand · 7 copies · chains A
- AZZ · 3'-azido-3'-deoxythymidine · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 563 | 0.88 | 0.93 | 67 | MYR |
| 2 | 603 | 0.87 | 0.91 | 68 | MYR, AZZ |
| 3 | 373 | 0.75 | 0.85 | 33 | MYR, AZZ |
| 4 | 322 | 0.73 | 0.85 | 42 | MYR |
| 5 | 190 | 0.61 | 0.83 | 19 | empty |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02768
- Elsewhere: RCSB PDB 3B9L · PDBe 3B9L · UniProt P02768
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