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Crystal structure of a novel engineered retroaldolase: ra-61

Analyse Crystal structure of a novel engineered retroaldolase: ra-61 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3B5L
Type: protein
Length: 198 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endoxylanase
EC: 3.2.1.8
Ligands: SO4, NH4
Pockets: 1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 61% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Endoxylanase (EC 3.2.1.8)	protein	198	5% helix, 61% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains B
NH4 · Ammonium ion · ion · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.62	0.81	34	NH4

Compared structures

3B5L · Crystal Structure of a Novel Engineered Retroaldolase: RA-61 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3B5L · PDBe 3B5L

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