Research workbench
Crystal structure of a luxt domain from vibrio parahaemolyticus rimd 2210633
Analyse Crystal structure of a luxt domain from vibrio parahaemolyticus rimd 2210633 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3B4S
- Type
- protein
- Length
- 727 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein luxt
- UniProt
- Q87J33
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 3 distinct chains · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Protein luxt | protein | 92 | 76% helix, 0% strand | Q87J33 |
| B, E, G | Protein luxt | protein | 91 | 78% helix, 0% strand | Q87J33 |
| D, F, H | Protein luxt | protein | 90 | 82% helix, 0% strand | Q87J33 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 869 | 0.77 | 0.81 | 83 | empty |
Interfaces
17 interfaces between chains.
- A–B · 1346 Ų buried · 7 hydrogen bonds · protein-protein
- G–H · 1314 Ų buried · 10 hydrogen bonds · protein-protein
- D–F · 1310 Ų buried · 4 hydrogen bonds · protein-protein
- F–H · 1304 Ų buried · 5 hydrogen bonds · protein-protein
- E–F · 1276 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 modified (engineered).
Compared structures
- 3B4S · Crystal structure of a LuxT domain from Vibrio parahaemolyticus RIMD 2210633 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87J33
- Elsewhere: RCSB PDB 3B4S · PDBe 3B4S · UniProt Q87J33
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.