Research workbench
Crystal structure of the uba domain of P62 and its interaction with ubiquitin
Analyse Crystal structure of the uba domain of P62 and its interaction with ubiquitin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3B0F
- Type
- protein
- Length
- 86 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sequestosome-1
- UniProt
- Q64337
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sequestosome-1 | protein | 43 | 70% helix, 0% strand | Q64337 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 723 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 3B0F · Crystal structure of the UBA domain of p62 and its interaction with ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
- Q64337 · AlphaFold monomer V2.0 prediction for sequestosome-1 (Q64337) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q64337
- Elsewhere: RCSB PDB 3B0F · PDBe 3B0F · UniProt Q64337
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