Research workbench
Structural and biochemical characterization of CLFB:LIGAND interactions
Analyse Structural and biochemical characterization of CLFB:LIGAND interactions in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ASW
- Type
- protein
- Length
- 331 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Clumping factor B; Tail region derived peptide
- UniProt
- Q7A382, P13645
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Clumping factor B | protein | 320 | 7% helix, 49% strand | Q7A382 |
| B | Tail region derived peptide | protein | 11 | 0% helix, 64% strand | P13645 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.55 | 0.76 | 39 | empty |
| 2 | 98 | 0.42 | 0.78 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 734 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 3ASW · Structural and biochemical characterization of ClfB:ligand interactions · the same entry in another collection · chain A against A, TM-score 1.00
- Q7A382 · AlphaFold monomer V2.0 prediction for clumping factor B (Q7A382) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P13645 · AlphaFold monomer V2.0 prediction for keratin, type I cytoskeletal 10 (P13645) · a predicted model of the same protein · chain B against A, TM-score 0.33
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7A382
- Every structure of UniProt P13645
- Elsewhere: RCSB PDB 3ASW · PDBe 3ASW · UniProt Q7A382 · UniProt P13645
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