Research workbench
Crystal structure of plodia interpunctella beta-GRP/GNBP3 N-terminal domain with laminarihexaoses
Analyse Crystal structure of plodia interpunctella beta-GRP/GNBP3 N-terminal domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3AQZ
- Type
- protein
- Length
- 202 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-1,3-glucan-binding protein
- UniProt
- Q8MU95
- Ligands
- BGC
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-1,3-glucan-binding protein | protein | 100 | 0% helix, 54% strand | Q8MU95 |
| B | Beta-1,3-glucan-binding protein | protein | 102 | 0% helix, 54% strand | Q8MU95 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 12 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 236 | 0.48 | 0.74 | 46 | empty |
Interfaces
1 interface between chains.
- A–B · 288 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3AQZ · Crystal structure of Plodia interpunctella beta-GRP/GNBP3 N-terminal domain with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8MU95 · AlphaFold monomer V2.0 prediction for beta-1,3-glucan-binding protein (Q8MU95) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8MU95
- Elsewhere: RCSB PDB 3AQZ · PDBe 3AQZ · UniProt Q8MU95
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