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Crystal structure of plodia interpunctella beta-GRP/GNBP3 N-terminal domain

Analyse Crystal structure of plodia interpunctella beta-GRP/GNBP3 N-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3AQY
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-1,3-glucan-binding protein
UniProt: Q8MU95
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-1,3-glucan-binding protein	protein	99	0% helix, 55% strand	Q8MU95
B	Beta-1,3-glucan-binding protein	protein	99	0% helix, 55% strand	Q8MU95

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	254	0.53	0.76	38	empty

Interfaces

1 interface between chains.

A–B · 141 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3AQY · Crystal structure of Plodia interpunctella beta-GRP/GNBP3 N-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Q8MU95 · AlphaFold monomer V2.0 prediction for beta-1,3-glucan-binding protein (Q8MU95) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8MU95
Elsewhere: RCSB PDB 3AQY · PDBe 3AQY · UniProt Q8MU95

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