Research workbench
Crystal structure of human pancreatic secretory protein ZG16B
Analyse Crystal structure of human pancreatic secretory protein ZG16B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3AQG
- Type
- protein
- Length
- 271 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zymogen granule protein 16 homolog B
- UniProt
- Q96DA0
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zymogen granule protein 16 homolog B | protein | 133 | 0% helix, 57% strand | Q96DA0 |
| B | Zymogen granule protein 16 homolog B | protein | 138 | 0% helix, 54% strand | Q96DA0 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.40 | 0.78 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 353 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 3AQG · Crystal structure of human pancreatic secretory protein ZG16b · the same entry in another collection · chain A against A, TM-score 1.00
- Q96DA0 · AlphaFold monomer V2.0 prediction for zymogen granule protein 16 homolog B (Q96DA0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96DA0
- Elsewhere: RCSB PDB 3AQG · PDBe 3AQG · UniProt Q96DA0
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