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Molecular insights into plant cell proliferation disturbance by agrobacterium protein 6B

Analyse Molecular insights into plant cell proliferation disturbance by agrobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3AQ3
Type: protein
Length: 564 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 6B protein
UniProt: Q57530
Pockets: 7 · best druggability 0.78

Structure

x-ray diffraction · 3 distinct chains · 23% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	6B protein	protein	187	23% helix, 28% strand	Q57530
B	6B protein	protein	187	22% helix, 28% strand	Q57530
C	6B protein	protein	190	23% helix, 28% strand	Q57530

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1111	0.78	0.80	67	empty
2	437	0.61	0.76	52	empty
3	116	0.45	0.78	18	empty
4	148	0.44	0.75	23	empty
5	98	0.39	0.76	22	empty

Interfaces

2 interfaces between chains.

A–B · 487 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 425 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3AQ3 · Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q57530
Elsewhere: RCSB PDB 3AQ3 · PDBe 3AQ3 · UniProt Q57530

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