Research workbench
Crystal structure of RNase hi from sulfolobus tokodaii with C-terminal deletion
Analyse Crystal structure of RNase hi from sulfolobus tokodaii with C-terminal deletion in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ALY
- Type
- protein
- Length
- 282 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein ST0753
- EC
- 3.1.26.4
- UniProt
- Q973Z8
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative uncharacterized protein ST0753 (EC 3.1.26.4) | protein | 141 | 40% helix, 24% strand | Q973Z8 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.42 | 0.77 | 17 | empty |
| 2 | 104 | 0.41 | 0.77 | 19 | empty |
| 3 | 51 | 0.28 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 947 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 3ALY · Crystal Structure of RNase HI from Sulfolobus tokodaii with C-terminal deletion · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q973Z8
- Elsewhere: RCSB PDB 3ALY · PDBe 3ALY · UniProt Q973Z8
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