Research workbench
Crystal structure of the single-stranded DNA binding protein from mycobacterium leprae (form I)
Analyse Crystal structure of the single-stranded DNA binding protein from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3AFP
- Type
- protein
- Length
- 224 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-stranded DNA-binding protein
- UniProt
- P46390
- Ligands
- CD
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single-stranded DNA-binding protein | protein | 109 | 9% helix, 54% strand | P46390 |
| B | Single-stranded DNA-binding protein | protein | 115 | 9% helix, 51% strand | P46390 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.32 | 0.78 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1432 Ų buried · 40 hydrogen bonds · protein-protein
Compared structures
- 3AFP · Crystal structure of the single-stranded DNA binding protein from Mycobacterium leprae… · the same entry in another collection · chain A against A, TM-score 1.00
- P46390 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein (P46390) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46390
- Elsewhere: RCSB PDB 3AFP · PDBe 3AFP · UniProt P46390
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