Research workbench
Crystal structure of the 2FE 2S ferredoxin from cyanidioschyzon merolae
Analyse Crystal structure of the 2FE 2S ferredoxin from cyanidioschyzon merolae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3AB5
- Type
- protein
- Length
- 194 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin
- UniProt
- Q85FT5
- Ligands
- FES
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ferredoxin | protein | 97 | 20% helix, 32% strand | Q85FT5 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.41 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 321 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3AB5 · Crystal structure of the 2Fe 2S Ferredoxin from Cyanidioschyzon merolae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q85FT5
- Elsewhere: RCSB PDB 3AB5 · PDBe 3AB5 · UniProt Q85FT5
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