Research workbench

Crystal structure of endonuclease IV from geobacillus kaustophilus

Analyse Crystal structure of endonuclease IV from geobacillus kaustophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3AAL
Type: protein
Length: 298 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable endonuclease 4
EC: 3.1.21.2
UniProt: Q5KX27
Ligands: FE, ZN
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable endonuclease 4 (EC 3.1.21.2)	protein	298	40% helix, 16% strand	Q5KX27

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A
ZN · Zinc ion · metal · chains A
CAC · Cacodylate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	209	0.48	0.75	37	CAC, FE

Compared structures

3AAL · Crystal Structure of endonuclease IV from Geobacillus kaustophilus · the same entry in another collection · chain A against A, TM-score 1.00
Q5KX27 · AlphaFold monomer V2.0 prediction for probable endonuclease 4 (Q5KX27) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5KX27
Elsewhere: RCSB PDB 3AAL · PDBe 3AAL · UniProt Q5KX27

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.