Research workbench
Plant adenylate isopentenyltransferase in complex with ATP
Analyse Plant adenylate isopentenyltransferase in complex with ATP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3A8T
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenylate isopentenyltransferase
- EC
- 2.5.1.27
- UniProt
- Q5GHF7
- Ligands
- ATP, PO4
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenylate isopentenyltransferase (EC 2.5.1.27) | protein | 289 | 51% helix, 12% strand | Q5GHF7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 765 | 0.75 | 0.80 | 72 | ATP, PO4 |
Compared structures
- 3A8T · Plant adenylate isopentenyltransferase in complex with ATP · the same entry in another collection · chain A against A, TM-score 1.00
- Q5GHF7 · AlphaFold monomer V2.0 prediction for adenylate isopentenyltransferase (Q5GHF7) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5GHF7
- Elsewhere: RCSB PDB 3A8T · PDBe 3A8T · UniProt Q5GHF7
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