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Crystal structure of grpe from thermus thermophilus HB8

Analyse Crystal structure of grpe from thermus thermophilus HB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3A6M
Type: protein
Length: 332 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein grpe
UniProt: Q56236
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein grpe	protein	168	46% helix, 19% strand	Q56236
B	Protein grpe	protein	164	46% helix, 21% strand	Q56236

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.32	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 3143 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

3A6M · Crystal structure of GrpE from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Q56236 · AlphaFold monomer V2.0 prediction for protein grpe (Q56236) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56236
Elsewhere: RCSB PDB 3A6M · PDBe 3A6M · UniProt Q56236

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