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Crystal structure of a hemoglobin component V from propsilocerus akamusi (PH6.5 coordinates)

Analyse Crystal structure of a hemoglobin component V from propsilocerus akamusi (PH6.5… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3A5B
Type: protein
Length: 152 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hemoglobin V
UniProt: Q7M422
Ligands: HEM
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hemoglobin V	protein	152	74% helix, 0% strand	Q7M422

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.70	0.86	25	HEM

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3A5B · Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7M422
Elsewhere: RCSB PDB 3A5B · PDBe 3A5B · UniProt Q7M422

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