Research workbench
Crystal structure of M. jannaschii TYW2 in complex with adomet
Analyse Crystal structure of M. jannaschii TYW2 in complex with adomet in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3A27
- Type
- protein
- Length
- 219 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein MJ1557
- UniProt
- Q58952
- Ligands
- SAM
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein MJ1557 | protein | 219 | 27% helix, 40% strand | Q58952 |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.61 | 0.80 | 34 | SAM |
Compared structures
- 3A27 · Crystal structure of M. jannaschii TYW2 in complex with AdoMet · the same entry in another collection · chain A against A, TM-score 1.00
- Q58952 · AlphaFold monomer V2.0 prediction for TRNA(PHE) (4-DEMETHYLWYOSINE(37)-C(7))… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58952
- Elsewhere: RCSB PDB 3A27 · PDBe 3A27 · UniProt Q58952
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