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The crystal structure of geotrichum sp. M128 xyloglucanase
Analyse The crystal structure of geotrichum sp. M128 xyloglucanase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3A0F
- Type
- protein
- Length
- 753 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xyloglucanase
- EC
- 3.2.1.151
- UniProt
- Q764N8
- Pockets
- 6 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xyloglucanase (EC 3.2.1.151) | protein | 753 | 4% helix, 37% strand | Q764N8 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 554 | 0.82 | 0.88 | 47 | empty |
| 2 | 517 | 0.74 | 0.83 | 74 | empty |
| 3 | 99 | 0.65 | 0.90 | 24 | empty |
| 4 | 352 | 0.57 | 0.75 | 48 | empty |
| 5 | 146 | 0.40 | 0.74 | 36 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3A0F · The crystal structure of Geotrichum sp. M128 xyloglucanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q764N8
- Elsewhere: RCSB PDB 3A0F · PDBe 3A0F · UniProt Q764N8
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