Research workbench
3'-DNA-RNA-5' junction formed during initiation of minus- strand synthesis of HIV replication
Analyse 3'-DNA-RNA-5' junction formed during initiation of minus- strand synthesis of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 398D
- Type
- RNA
- Length
- 32 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3'); DNA/RNA (5'-R(*GP*CP*CP*AP)-D(*CP*TP*GP*C)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | RNA (5'-R(*GP*CP*AP*GP*UP*GP*GP*C)-3') | rna | 8 | — | — |
| B, D | DNA/RNA (5'-R(*GP*CP*CP*AP)-D(*CP*TP*GP*C)-3') | rna | 8 | — | — |
Interfaces
5 interfaces between chains.
- A–B · 387 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- C–D · 385 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- A–C · 86 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- B–D · 84 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- B–C · 82 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Compared structures
- 398D · 3'-DNA-RNA-5' junction formed during initiation of minus-strand synthesis of HIV… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 398D · PDBe 398D
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.