Research workbench
5'-R(*CP*GP*UP*AP*CP*DG)-3'
Analyse 5'-R(*CP*GP*UP*AP*CP*DG)-3' in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 377D
- Type
- RNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3') | rna | 6 | — | — |
Interfaces
2 interfaces between chains.
- C–D · 317 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- A–B · 316 Ų buried · 28 hydrogen bonds · nucleic-nucleic
Compared structures
- 377D · 5'-R(*CP*GP*UP*AP*CP*DG)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 377D · PDBe 377D
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