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Crystal structure of LIPL32, the most abundant surface protein of pathogenic leptospira spp
Analyse Crystal structure of LIPL32, the most abundant surface protein of pathogenic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ZZ8
- Type
- protein
- Length
- 460 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LIPL32 protein
- UniProt
- O34094
- Pockets
- 7 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | LIPL32 protein | protein | 230 | 16% helix, 38% strand | O34094 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.80 | 0.98 | 26 | empty |
| 2 | 428 | 0.58 | 0.74 | 34 | empty |
| 3 | 165 | 0.46 | 0.76 | 29 | empty |
| 4 | 62 | 0.39 | 0.80 | 17 | empty |
| 5 | 54 | 0.38 | 0.80 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1276 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2ZZ8 · Crystal structure of LipL32, the most abundant surface protein of pathogenic leptospira… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34094
- Elsewhere: RCSB PDB 2ZZ8 · PDBe 2ZZ8 · UniProt O34094
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