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Crystal structure of yycf DNA-binding domain from staphylococcus aureus

Analyse Crystal structure of yycf DNA-binding domain from staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZXJ
Type: protein
Length: 200 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulatory protein walr
UniProt: Q9RDT5
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transcriptional regulatory protein walr	protein	100	37% helix, 23% strand	Q9RDT5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.35	0.76	22	empty

Interfaces

1 interface between chains.

A–B · 224 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

2ZXJ · Crystal structure of YycF DNA-binding domain from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Q9RDT5 · AlphaFold monomer V2.0 prediction for transcriptional regulatory protein walr (Q9RDT5) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RDT5
Elsewhere: RCSB PDB 2ZXJ · PDBe 2ZXJ · UniProt Q9RDT5

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