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Crystal structure of thermus thermophilus 16S rRNA methyltransferase rsmc (TTHA0533)

Analyse Crystal structure of thermus thermophilus 16S rRNA methyltransferase rsmc… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZWV
Type: protein
Length: 373 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable ribosomal RNA small subunit methyltransferase
UniProt: Q5SKW0
Ligands: SAH
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable ribosomal RNA small subunit methyltransferase	protein	373	31% helix, 31% strand	Q5SKW0

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	630	0.72	0.79	62	SAH

Compared structures

2ZWV · Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SKW0
Elsewhere: RCSB PDB 2ZWV · PDBe 2ZWV · UniProt Q5SKW0

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