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Structure of the periplasmic domain of motb from salmonella (crystal form II)

Analyse Structure of the periplasmic domain of motb from salmonella (crystal form II) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZVY
Type: protein
Length: 363 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chemotaxis protein motb
UniProt: P55892
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chemotaxis protein motb	protein	183	45% helix, 19% strand	P55892
B	Chemotaxis protein motb	protein	180	48% helix, 19% strand	P55892

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.60	0.86	24	empty
2	177	0.51	0.78	22	empty
3	61	0.41	0.81	20	empty

Interfaces

1 interface between chains.

A–B · 1876 Å² buried · 39 hydrogen bonds · protein-protein

Compared structures

2ZVY · Structure of the periplasmic domain of MotB from Salmonella (crystal form II) · the same entry in another collection · chain A against A, TM-score 1.00
P55892 · AlphaFold monomer V2.0 prediction for motility protein B (P55892) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55892
Elsewhere: RCSB PDB 2ZVY · PDBe 2ZVY · UniProt P55892

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