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High resolution crystal structure of dtdp-6-deoxy-D-xylo-4-hexulose 3, 5-epimerase from methanobacterium thermoautotrophicum

Analyse High resolution crystal structure of dtdp-6-deoxy-D-xylo-4-hexulose 3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EP0
Type: protein
Length: 183 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dtdp-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
EC: 5.1.3.13
UniProt: O27818
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dtdp-6-deoxy-D-xylo-4-hexulose 3,5-epimerase (EC 5.1.3.13)	protein	183	9% helix, 43% strand	O27818

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	150	0.54	0.81	25	empty

Compared structures

1EP0 · High resolution crystal structure of dtdp-6-deoxy-D-xylo-4-hexulose 3,5-epimerase from… · the same entry in another collection · chain A against A, TM-score 1.00
O27818 · AlphaFold monomer V2.0 prediction for dtdp-4-dehydrorhamnose 3,5-epimerase (O27818) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O27818
Elsewhere: RCSB PDB 1EP0 · PDBe 1EP0 · UniProt O27818

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