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Crystal structure of recombinant agrocybe aegerita (raal)

Analyse Crystal structure of recombinant agrocybe aegerita (raal) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZGL
Type: protein
Length: 320 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Anti-tumor lectin
EC: 3.1.21.-
UniProt: Q6WY08
Pockets: 2 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Anti-tumor lectin (EC 3.1.21.-)	protein	160	3% helix, 52% strand	Q6WY08

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	212	0.56	0.79	29	empty
2	88	0.43	0.79	23	empty

Interfaces

1 interface between chains.

A–B · 1030 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

2ZGL · Crystal structure of recombinant Agrocybe aegerita (rAAL) · the same entry in another collection · chain A against A, TM-score 1.00
Q6WY08 · AlphaFold monomer V2.0 prediction for anti-tumor lectin (Q6WY08) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6WY08
Elsewhere: RCSB PDB 2ZGL · PDBe 2ZGL · UniProt Q6WY08

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