Research workbench
Crystal structure of vioe
Analyse Crystal structure of vioe in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ZF3
- Type
- protein
- Length
- 1,089 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein vioe
- UniProt
- Q7NSZ5
- Pockets
- 18 · best druggability 0.82
Structure
x-ray diffraction · 6 distinct chains · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein vioe | protein | 186 | 6% helix, 53% strand | Q7NSZ5 |
| B | Hypothetical protein vioe | protein | 169 | 5% helix, 56% strand | Q7NSZ5 |
| C | Hypothetical protein vioe | protein | 182 | 7% helix, 51% strand | Q7NSZ5 |
| D | Hypothetical protein vioe | protein | 185 | 6% helix, 55% strand | Q7NSZ5 |
| E | Hypothetical protein vioe | protein | 186 | 6% helix, 55% strand | Q7NSZ5 |
| F | Hypothetical protein vioe | protein | 181 | 7% helix, 51% strand | Q7NSZ5 |
Pockets
18 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 830 | 0.82 | 0.84 | 83 | empty |
| 2 | 916 | 0.73 | 0.77 | 99 | empty |
| 3 | 104 | 0.68 | 0.91 | 22 | empty |
| 4 | 310 | 0.66 | 0.81 | 36 | empty |
| 5 | 336 | 0.63 | 0.79 | 37 | empty |
Interfaces
7 interfaces between chains.
- C–D · 1897 Ų buried · 24 hydrogen bonds · protein-protein
- E–F · 1819 Ų buried · 22 hydrogen bonds · protein-protein
- A–B · 1750 Ų buried · 24 hydrogen bonds · protein-protein
- A–F · 525 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 253 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2ZF3 · Crystal Structure of VioE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NSZ5
- Elsewhere: RCSB PDB 2ZF3 · PDBe 2ZF3 · UniProt Q7NSZ5
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