Research workbench

Crystal structure of family 7 alginate lyase A1-II' Y284F in cmplex with product (ggg)

Analyse Crystal structure of family 7 alginate lyase A1-II' Y284F in cmplex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2ZAB
Type: protein
Length: 226 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alginate lyase
EC: 4.2.2.3
UniProt: Q75WP3
Ligands: LGU
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alginate lyase (EC 4.2.2.3)	protein	226	8% helix, 50% strand	Q75WP3

Ligands and binding sites

LGU · alpha-L-gulopyranuronic acid · ligand · 3 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	189	0.47	0.75	29	LGU

Compared structures

2ZAB · Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q75WP3
Elsewhere: RCSB PDB 2ZAB · PDBe 2ZAB · UniProt Q75WP3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.