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Complex structures of mouse RPN13 (22-130AA) and ubiquitin

Analyse Complex structures of mouse RPN13 (22-130AA) and ubiquitin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Z59
Type: protein
Length: 185 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein ADRM1; Ubiquitin
UniProt: Q9JKV1, P62988
Pockets: 1 · best druggability 0.40

Structure

solution nmr · 2 distinct chains · 16% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein ADRM1	protein	109	15% helix, 49% strand	Q9JKV1
B	Ubiquitin	protein	76	18% helix, 32% strand	P62988

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.40	0.77	18	empty

Interfaces

1 interface between chains.

A–B · 602 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

2Z59 · Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
Q9JKV1 · AlphaFold monomer V2.0 prediction for proteasomal ubiquitin receptor ADRM1 (Q9JKV1) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JKV1
Every structure of UniProt P62988
Elsewhere: RCSB PDB 2Z59 · PDBe 2Z59 · UniProt Q9JKV1 · UniProt P62988

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