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Crystal structure of family 7 alginate lyase A1-II' from sphingomonas sp. A1

Analyse Crystal structure of family 7 alginate lyase A1-II' from sphingomonas sp. A1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Z42
Type: protein
Length: 233 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alginate lyase
EC: 4.2.2.3
UniProt: Q75WP3
Ligands: SO4
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alginate lyase (EC 4.2.2.3)	protein	233	8% helix, 49% strand	Q75WP3

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.42	0.78	31	SO4

Compared structures

2Z42 · Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q75WP3
Elsewhere: RCSB PDB 2Z42 · PDBe 2Z42 · UniProt Q75WP3

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