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Crystal structure of uncharacterized conserved protein from thermus thermophilus HB8

Analyse Crystal structure of uncharacterized conserved protein from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2Z07
Type: protein
Length: 792 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein TTHA0978
UniProt: Q5SJN0
Pockets: 7 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 52% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein TTHA0978	protein	389	53% helix, 8% strand	Q5SJN0
B	Putative uncharacterized protein TTHA0978	protein	403	51% helix, 9% strand	Q5SJN0

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	294	0.63	0.80	37	empty
2	144	0.52	0.79	35	empty
3	70	0.47	0.83	21	empty
4	53	0.46	0.84	16	empty
5	98	0.43	0.78	21	empty

Interfaces

1 interface between chains.

A–B · 36 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

2Z07 · Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SJN0
Elsewhere: RCSB PDB 2Z07 · PDBe 2Z07 · UniProt Q5SJN0

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