Research workbench
Crystal structure of uncharacterized conserved protein from pyrococcus horikoshii
Analyse Crystal structure of uncharacterized conserved protein from pyrococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YZQ
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein PH1780
- UniProt
- O59416
- Ligands
- SAM
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein PH1780 | protein | 224 | 30% helix, 29% strand | O59416 |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.44 | 0.74 | 20 | empty |
| 2 | 73 | 0.39 | 0.79 | 18 | SAM |
| 3 | 81 | 0.38 | 0.77 | 14 | empty |
Compared structures
- 2YZQ · Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O59416
- Elsewhere: RCSB PDB 2YZQ · PDBe 2YZQ · UniProt O59416
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