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Crystal structure of uncharacterized conserved protein from pyrococcus horikoshii
Analyse Crystal structure of uncharacterized conserved protein from pyrococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YZI
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PH0107
- UniProt
- O57847
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PH0107 | protein | 132 | 35% helix, 27% strand | O57847 |
| B | Hypothetical protein PH0107 | protein | 136 | 32% helix, 26% strand | O57847 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 837 | 0.76 | 0.80 | 79 | empty |
| 2 | 57 | 0.26 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1419 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 2YZI · Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57847
- Elsewhere: RCSB PDB 2YZI · PDBe 2YZI · UniProt O57847
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