Research workbench
Crystal structure of succinyl-CoA synthetase alpha chain from methanocaldococcus jannaschii dsm 2661
Analyse Crystal structure of succinyl-CoA synthetase alpha chain from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YV1
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Succinyl-CoA ligase [ADP-forming] subunit alpha
- EC
- 6.2.1.5
- UniProt
- Q58643
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Succinyl-CoA ligase [ADP-forming] subunit alpha (EC 6.2.1.5) | protein | 268 | 38% helix, 24% strand | Q58643 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.49 | 0.82 | 21 | empty |
| 2 | 59 | 0.28 | 0.73 | 19 | empty |
Compared structures
- 2YV1 · Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58643 · AlphaFold monomer V2.0 prediction for succinate--CoA ligase [ADP- forming] subunit alpha… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58643
- Elsewhere: RCSB PDB 2YV1 · PDBe 2YV1 · UniProt Q58643
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