Research workbench
Solution structure of the NCD2 domain in human transcriptional repressor NAB1 protein
Analyse Solution structure of the NCD2 domain in human transcriptional repressor NAB1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YUF
- Type
- protein
- Length
- 142 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ngfi-a-binding protein 1
- UniProt
- Q13506
- Pockets
- 4 · best druggability 0.40
Structure
solution nmr · 1 distinct chain · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ngfi-a-binding protein 1 | protein | 142 | 58% helix, 0% strand | Q13506 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.40 | 0.73 | 23 | empty |
| 2 | 51 | 0.34 | 0.78 | 13 | empty |
| 3 | 50 | 0.32 | 0.77 | 18 | empty |
| 4 | 59 | 0.29 | 0.74 | 12 | empty |
Compared structures
- 2YUF · Solution structure of the NCD2 domain in human transcriptional repressor Nab1 protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q13506 · AlphaFold monomer V2.0 prediction for ngfi-a-binding protein 1 (Q13506) · a predicted model of the same protein · chain A against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13506
- Elsewhere: RCSB PDB 2YUF · PDBe 2YUF · UniProt Q13506
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