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Star-related lipid transport domain of MLN64

Analyse Star-related lipid transport domain of MLN64 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1EM2
Type: protein
Length: 214 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MLN64 protein
UniProt: Q14849
Pockets: 2 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MLN64 protein	protein	214	29% helix, 38% strand	Q14849

Ligands and binding sites

TAR · D(-)-tartaric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	353	0.86	0.95	48	empty
2	82	0.34	0.75	20	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

1EM2 · Star-related lipid transport domain of MLN64 · the same entry in another collection · chain A against A, TM-score 1.00
Q14849 · AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 3 (Q14849) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q14849
Elsewhere: RCSB PDB 1EM2 · PDBe 1EM2 · UniProt Q14849

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