Research workbench
Crystal structure of gar synthetase from geobacillus kaustophilus
Analyse Crystal structure of gar synthetase from geobacillus kaustophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YRW
- Type
- protein
- Length
- 413 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoribosylglycinamide synthetase
- EC
- 6.3.4.13
- UniProt
- Q5L3C7
- Ligands
- PO4
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoribosylglycinamide synthetase (EC 6.3.4.13) | protein | 413 | 33% helix, 31% strand | Q5L3C7 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 518 | 0.64 | 0.76 | 61 | PO4 |
| 2 | 114 | 0.37 | 0.74 | 23 | empty |
| 3 | 98 | 0.35 | 0.74 | 16 | empty |
Compared structures
- 2YRW · Crystal structure of GAR synthetase from Geobacillus kaustophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L3C7
- Elsewhere: RCSB PDB 2YRW · PDBe 2YRW · UniProt Q5L3C7
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