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Gamma-D crystallin structure at 1.95 a resolution

Analyse Gamma-D crystallin structure at 1.95 a resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ELP
Type: protein
Length: 346 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gamma-D crystallin
UniProt: P08209
Pockets: 3 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Gamma-D crystallin	protein	173	9% helix, 46% strand	P08209

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.34	0.75	21	empty
2	58	0.31	0.76	20	empty
3	52	0.26	0.74	11	empty

Interfaces

1 interface between chains.

A–B · 265 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1ELP · Gamma-D crystallin structure at 1.95 a resolution · the same entry in another collection · chain A against A, TM-score 1.00
P08209 · AlphaFold monomer V2.0 prediction for gamma-crystallin D (P08209) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08209
Elsewhere: RCSB PDB 1ELP · PDBe 1ELP · UniProt P08209

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